bioinformatics

topics / bioinformatics

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Repos

RankRepoStarsLanguageDeveloper
nextflow-io/nextflow on Github1nextflow1,985Groovynextflow-io
bioconda/bioconda-recipes on Github2bioconda-recipes1,461Shellbioconda
lh3/minimap2 on Github3minimap21,400Clh3
bigdatagenomics/adam on Github4adam948Scalabigdatagenomics
crazyhottommy/getting-started-with-genomics-tools-and-resources on Github5getting-started-with-genomics-tools-and-resources880Shellcrazyhottommy
BioContainers/containers on Github6containers562DockerfileBioContainers
biod/sambamba on Github7sambamba502Dbiod
benjjneb/dada2 on Github8dada2382Rbenjjneb
twbattaglia/RNAseq-workflow on Github9RNAseq-workflow308Rtwbattaglia
ablab/quast on Github10quast296AMPLablab
bioperl/bioperl-live on Github11bioperl-live280Perlbioperl
lh3/miniasm on Github12miniasm266TeXlh3
fulcrumgenomics/fgbio on Github13fgbio263Scalafulcrumgenomics
BioJulia/Bio.jl on Github14Bio.jl257JuliaBioJulia
tiagoantao/bioinf-python on Github15bioinf-python212OpenEdge ABLtiagoantao
brentp/somalier on Github16somalier186Nimbrentp
stuart-lab/signac on Github17signac215Rstuart-lab
mikelove/bioc-refcard on Github18bioc-refcard177Rmikelove
igordot/genomics on Github19genomics169Rigordot
KamilSJaron/smudgeplot on Github20smudgeplot150RKamilSJaron
ANHIG/IMGTHLA on Github21IMGTHLA145ParrotANHIG
ngless-toolkit/ngless on Github22ngless140Haskellngless-toolkit
rdk/p2rank on Github23p2rank138Groovyrdk
StaPH-B/docker-builds on Github24docker-builds129HTMLStaPH-B
BioJulia/BioSequences.jl on Github25BioSequences.jl124JuliaBioJulia
mikessh/vdjtools on Github26vdjtools110Groovymikessh
spacegraphcats/spacegraphcats on Github27spacegraphcats106Standard MLspacegraphcats
lh3/fermikit on Github28fermikit105TeXlh3
CSBiology/BioFSharp on Github29BioFSharp99F#CSBiology
ewels/ClusterFlow on Github30ClusterFlow94Perlewels
robertaboukhalil/fastq.bio on Github31fastq.bio93Svelterobertaboukhalil
shenwei356/bio_scripts on Github32bio_scripts90Perlshenwei356
telatin/seqfu2 on Github33seqfu279Nimtelatin
biowdl/tasks on Github34tasks73wdlbiowdl
BioJulia/BioStructures.jl on Github35BioStructures.jl73JuliaBioJulia
LANL-Bioinformatics/EDGE on Github36EDGE71PerlLANL-Bioinformatics
althonos/pyhmmer on Github37pyhmmer66Cythonalthonos
lh3/bfc on Github38bfc66TeXlh3
OpenGene/OpenGene.jl on Github39OpenGene.jl63JuliaOpenGene
diegozea/MIToS.jl on Github40MIToS.jl61Juliadiegozea
kcleal/dysgu on Github41dysgu59Ckcleal
BioJulia/GenomeGraphs.jl on Github42GenomeGraphs.jl58JuliaBioJulia
oschwengers/asap on Github43asap55Groovyoschwengers
cjfields/bioperl6 on Github44bioperl649Perl 6cjfields
zhangrengang/TEsorter on Github45TEsorter59Pep8zhangrengang
brentp/hts-nim-tools on Github46hts-nim-tools46Nimbrentp
biod/BioD on Github47BioD46Dbiod
telatin/bamtocov on Github48bamtocov45Nimtelatin
rdpstaff/RDPTools on Github49RDPTools45Makefilerdpstaff
mikessh/migmap on Github50migmap44Groovymikessh
pveber/bistro on Github51bistro44OCamlpveber
gem-pasteur/Integron_Finder on Github52Integron_Finder41F*gem-pasteur
gencorefacility/variant-calling-pipeline-gatk4 on Github53variant-calling-pipeline-gatk440Nextflowgencorefacility
montilab/pipeliner on Github54pipeliner40Nextflowmontilab
mikessh/migec on Github55migec39Groovymikessh
RNAcentral/R2DT on Github56R2DT39PostScriptRNAcentral
lindenb/xslt-sandbox on Github57xslt-sandbox39XSLTlindenb
hall-lab/sv-pipeline on Github58sv-pipeline39wdlhall-lab
dib-lab/charcoal on Github59charcoal33Pythondib-lab
lh3/klib.nim on Github60klib.nim32Nimlh3
UPHL-BioNGS/Cecret on Github61Cecret27NextflowUPHL-BioNGS
MonashBioinformaticsPlatform/bio-ansible on Github62bio-ansible22JinjaMonashBioinformaticsPlatform
NKI-CCB/DISCOVER on Github63DISCOVER21FortranNKI-CCB
mblmicdiv/course2017 on Github64course201720Standard MLmblmicdiv
NCI-GDC/gdc-dnaseq-cwl on Github65gdc-dnaseq-cwl20Common Workflow LanguageNCI-GDC
albertozeni/LOGAN on Github66LOGAN19Cudaalbertozeni
lmb-embrapa/machado on Github67machado19PLpgSQLlmb-embrapa
brentp/genoiser on Github68genoiser15Nimbrentp
althonos/pyfastani on Github69pyfastani14Cythonalthonos
hernanmd/BioSmalltalk on Github70BioSmalltalk13Smalltalkhernanmd
althonos/pymuscle5 on Github71pymuscle512Cythonalthonos
Unaimend/bionim on Github72bionim12NimUnaimend
stjude/indelPost on Github73indelPost11Cstjude
bigbio/nf-workflows on Github74nf-workflows11Nextflowbigbio
mjendrusch/nimna on Github75nimna11Nimmjendrusch
althonos/pytrimal on Github76pytrimal9Cythonalthonos
BioSciTools/BioSciTools.github.io on Github77BioSciTools.github.io9EJSBioSciTools
UPHL-BioNGS/Grandeur on Github78Grandeur9NextflowUPHL-BioNGS
kids-first/kf-somatic-workflow on Github79kf-somatic-workflow9Common Workflow Languagekids-first
saketkc/moca on Github80moca9PostScriptsaketkc
lindenb/gazoduc-nf on Github81gazoduc-nf8Nextflowlindenb
mobinasri/flagger on Github82flagger8wdlmobinasri
kids-first/kf-rnaseq-workflow on Github83kf-rnaseq-workflow8Common Workflow Languagekids-first
kids-first/kf-alignment-workflow on Github84kf-alignment-workflow8Common Workflow Languagekids-first
SMRUCC/R.Bioinformatics on Github85R.Bioinformatics8Visual Basic .NETSMRUCC
annadalmolin/CRAFT on Github86CRAFT7RMarkdownannadalmolin
hernanmd/COVID-2019 on Github87COVID-20197Smalltalkhernanmd
wtwt5237/raku-for-bioinformatics on Github88raku-for-bioinformatics7Rakuwtwt5237
quadram-institute-bioscience/albatradis on Github89albatradis7Gnuplotquadram-institute-bioscience
kids-first/kf-jointgenotyping-workflow on Github90kf-jointgenotyping-workflow7Common Workflow Languagekids-first
ZuberLab/crispr-mageck-nf on Github91crispr-mageck-nf5NextflowZuberLab
djhshih/biopkgs on Github92biopkgs5Nixdjhshih
TalusBio/nf-encyclopedia on Github93nf-encyclopedia4NextflowTalusBio
Barski-lab/sc-seq-analysis on Github94sc-seq-analysis4Common Workflow LanguageBarski-lab
UPHL-BioNGS/Donut_Falls on Github95Donut_Falls4NextflowUPHL-BioNGS
pony-bio/pony-bio on Github96pony-bio4Ponypony-bio
ljdursi/rosalind_chapel on Github97rosalind_chapel4Chapelljdursi
icgc-argo-workflows/dna-seq-processing-wfs on Github98dna-seq-processing-wfs3Nextflowicgc-argo-workflows
Bioinformatics-IBB/Modeller-Ubuntu on Github99Modeller-Ubuntu3ParrotBioinformatics-IBB
genomicsITER-developers/wdl on Github100wdl3wdlgenomicsITER-developers